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| 17.04.2010 | 14:00 | Jahn Regensburg | - | VfL Osnabrück | 2:2 (1:2) | |
| 14:00 | 1. FC Heidenheim 1846 | - | SpVgg Unterhaching | 2:4 (1:2) | ||
| 14:00 | Wuppertaler SV | - | FC Ingolstadt 04 | 0:2 (0:1) | ||
| 14:00 | SV Wehen Wiesbaden | - | Werder Bremen II | 2:0 (2:0) | ||
| 14:00 | SV Sandhausen | - | Eintracht Braunschweig | 1:1 (1:0) | ||
| 14:00 | Bayern München II | - | Wacker Burghausen | 2:0 (1:0) | ||
| 14:00 | Erzgebirge Aue | - | Holstein Kiel | 3:1 (0:0) | ||
| 14:15 | Dynamo Dresden | - | FC Carl Zeiss Jena | 0:3 (0:0) | ||
| 18.04.2010 | 14:00 | Rot-Weiß Erfurt | - | Borussia Dortmund II | 1:0 (1:0) | |
| 14:00 | VfB Stuttgart II | - | Kickers Offenbach | 2:0 (2:0) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Erzgebirge Aue | 35 | 18 | 8 | 9 | 52:38 | 14 | 62 |
| 2 |
|
VfL Osnabrück | 35 | 17 | 9 | 9 | 49:35 | 14 | 60 |
| 3 |
|
FC Ingolstadt 04 | 35 | 17 | 8 | 10 | 65:43 | 22 | 59 |
| 4 |
|
FC Carl Zeiss Jena | 35 | 16 | 11 | 8 | 51:39 | 12 | 59 |
| 5 |
|
Eintracht Braunschweig | 35 | 16 | 10 | 9 | 50:33 | 17 | 58 |
| 6 |
|
1. FC Heidenheim 1846 | 35 | 15 | 7 | 13 | 59:53 | 6 | 52 |
| 7 |
|
Bayern München II | 35 | 14 | 9 | 12 | 51:57 | -6 | 51 |
| 8 |
|
Kickers Offenbach | 35 | 13 | 11 | 11 | 47:33 | 14 | 50 |
| 9 |
|
Rot-Weiß Erfurt | 35 | 13 | 9 | 13 | 37:38 | -1 | 48 |
| 10 |
|
Dynamo Dresden | 35 | 13 | 8 | 14 | 36:39 | -3 | 47 |
| 11 |
|
SV Wehen Wiesbaden | 35 | 13 | 8 | 14 | 48:52 | -4 | 47 |
| 12 |
|
VfB Stuttgart II | 35 | 14 | 3 | 18 | 47:47 | 0 | 45 |
| 13 |
|
SV Sandhausen | 35 | 11 | 12 | 12 | 52:58 | -6 | 45 |
| 14 |
|
Wacker Burghausen | 35 | 13 | 6 | 16 | 44:60 | -16 | 45 |
| 15 |
|
SpVgg Unterhaching | 35 | 11 | 11 | 13 | 46:46 | 0 | 44 |
| 16 |
|
Jahn Regensburg | 35 | 10 | 12 | 13 | 39:44 | -5 | 42 |
| 17 |
|
Werder Bremen II | 35 | 11 | 8 | 16 | 43:51 | -8 | 41 |
| 18 |
|
Wuppertaler SV | 35 | 10 | 7 | 18 | 37:56 | -19 | 37 |
| 19 |
|
Borussia Dortmund II | 35 | 10 | 6 | 19 | 37:52 | -15 | 36 |
| 20 |
|
Holstein Kiel | 35 | 8 | 11 | 16 | 37:53 | -16 | 35 |
| Aufstieg | |
| Relegation | |
| Abstieg |
