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| 29.09.2012 | 15:30 | Radnik Bijeljina | - | Slavija Sarajevo | 2:0 (0:0) | |
| 15:30 | FK Rudar | - | Zvijezda Gradačac | 2:0 (1:0) | ||
| 15:30 | Gradina Srebrenik | - | Borac Banja Luka | 1:3 (0:1) | ||
| 15:30 | Olimpic Sarajevo | - | NK Travnik | 2:0 (0:0) | ||
| 18:30 | Čelik Zenica | - | Željezničar Sarajevo | 1:2 (1:1) | ||
| 30.09.2012 | 15:30 | NK GOŠK Gabela | - | Zrinjski Mostar | 0:1 (0:0) | |
| 15:30 | Velež Mostar | - | Leotar Trebinje | 1:1 (0:0) | ||
| 18:00 | FK Sarajevo | - | Široki Brijeg | 2:1 (1:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Sarajevo | 8 | 7 | 1 | 0 | 20:4 | 16 | 22 |
| 2 |
|
Željezničar Sarajevo | 8 | 5 | 2 | 1 | 13:6 | 7 | 17 |
| 3 |
|
Zrinjski Mostar | 8 | 5 | 1 | 2 | 6:4 | 2 | 16 |
| 4 |
|
Borac Banja Luka | 8 | 4 | 1 | 3 | 13:6 | 7 | 13 |
| 5 |
|
Olimpic Sarajevo | 8 | 3 | 4 | 1 | 7:4 | 3 | 13 |
| 6 |
|
FK Rudar | 8 | 4 | 1 | 3 | 10:11 | -1 | 13 |
| 7 |
|
Slavija Sarajevo | 8 | 3 | 3 | 2 | 5:6 | -1 | 12 |
| 8 |
|
Leotar Trebinje | 8 | 3 | 2 | 3 | 7:8 | -1 | 11 |
| 9 |
|
Široki Brijeg | 8 | 2 | 3 | 3 | 8:8 | 0 | 9 |
| 10 |
|
Čelik Zenica | 8 | 2 | 2 | 4 | 7:8 | -1 | 8 |
| 11 |
|
NK Travnik | 8 | 2 | 2 | 4 | 6:8 | -2 | 8 |
| 12 |
|
Velež Mostar | 8 | 2 | 2 | 4 | 10:13 | -3 | 8 |
| 13 |
|
NK GOŠK Gabela | 8 | 2 | 2 | 4 | 7:11 | -4 | 8 |
| 14 |
|
Radnik Bijeljina | 8 | 1 | 4 | 3 | 5:9 | -4 | 7 |
| 15 |
|
Zvijezda Gradačac | 8 | 2 | 1 | 5 | 4:11 | -7 | 7 |
| 16 |
|
Gradina Srebrenik | 8 | 0 | 3 | 5 | 7:18 | -11 | 3 |
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| Europa League Quali. | |
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