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| 27.02.2010 | 14:00 | VfL Osnabrück | - | Dynamo Dresden | 1:1 (1:0) | |
| 14:00 | Wacker Burghausen | - | FC Ingolstadt 04 | 4:2 (2:1) | ||
| 14:00 | Eintracht Braunschweig | - | Kickers Offenbach | 0:0 (0:0) | ||
| 14:00 | SV Sandhausen | - | SV Wehen Wiesbaden | 2:1 (0:0) | ||
| 14:00 | Bayern München II | - | VfB Stuttgart II | 2:0 (1:0) | ||
| 14:00 | Erzgebirge Aue | - | Wuppertaler SV | 1:0 (0:0) | ||
| 14:00 | Rot-Weiß Erfurt | - | 1. FC Heidenheim 1846 | 1:2 (1:1) | ||
| 17.03.2010 | 18:30 | Borussia Dortmund II | - | FC Carl Zeiss Jena | 0:3 (0:3) | |
| 24.03.2010 | 19:00 | Holstein Kiel | - | SpVgg Unterhaching | 2:2 (1:1) | |
| 20.04.2010 | 17:30 | Werder Bremen II | - | Jahn Regensburg | 4:1 (0:1) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 26 | 14 | 6 | 6 | 36:23 | 13 | 48 |
| 2 |
|
Erzgebirge Aue | 26 | 13 | 5 | 8 | 36:31 | 5 | 44 |
| 3 |
|
FC Ingolstadt 04 | 26 | 13 | 4 | 9 | 49:30 | 19 | 43 |
| 4 |
|
Eintracht Braunschweig | 26 | 11 | 8 | 7 | 35:24 | 11 | 41 |
| 5 |
|
1. FC Heidenheim 1846 | 26 | 12 | 5 | 9 | 45:39 | 6 | 41 |
| 6 |
|
Kickers Offenbach | 26 | 10 | 9 | 7 | 39:26 | 13 | 39 |
| 7 |
|
FC Carl Zeiss Jena | 26 | 10 | 8 | 8 | 32:31 | 1 | 38 |
| 8 |
|
SV Sandhausen | 26 | 10 | 7 | 9 | 41:43 | -2 | 37 |
| 9 |
|
Bayern München II | 26 | 10 | 6 | 10 | 37:45 | -8 | 36 |
| 10 |
|
Werder Bremen II | 26 | 10 | 5 | 11 | 39:37 | 2 | 35 |
| 11 |
|
Rot-Weiß Erfurt | 26 | 9 | 8 | 9 | 29:31 | -2 | 35 |
| 12 |
|
Wacker Burghausen | 26 | 10 | 5 | 11 | 29:44 | -15 | 35 |
| 13 |
|
Jahn Regensburg | 26 | 9 | 7 | 10 | 30:30 | 0 | 34 |
| 14 |
|
SpVgg Unterhaching | 26 | 8 | 8 | 10 | 34:37 | -3 | 32 |
| 15 |
|
SV Wehen Wiesbaden | 26 | 9 | 5 | 12 | 34:43 | -9 | 32 |
| 16 |
|
Dynamo Dresden | 26 | 8 | 7 | 11 | 28:32 | -4 | 31 |
| 17 |
|
Wuppertaler SV | 26 | 9 | 4 | 13 | 32:41 | -9 | 31 |
| 18 |
|
VfB Stuttgart II | 26 | 9 | 3 | 14 | 36:38 | -2 | 30 |
| 19 |
|
Borussia Dortmund II | 26 | 8 | 5 | 13 | 28:36 | -8 | 29 |
| 20 |
|
Holstein Kiel | 26 | 7 | 7 | 12 | 30:38 | -8 | 28 |
| Aufstieg | |
| Relegation | |
| Abstieg |
