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| 01.10.2016 | 15:00 | FK Rabotnički | - | FK Bregalnica Štip | 1:1 (0:0) | |
| 02.10.2016 | 15:00 | FK Renova | - | FK Pobeda Junior | 1:1 (0:1) | |
| 15:00 | FK Pelister | - | KF Shkëndija 79 | 1:2 (1:0) | ||
| 15:00 | Makedonija GP | - | KF Shkupi | 0:1 (0:1) | ||
| 15:00 | Sileks Kratovo | - | Vardar Skopje | 1:3 (0:2) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Vardar Skopje | 9 | 6 | 3 | 0 | 19:4 | 15 | 21 |
| 2 |
|
KF Shkëndija 79 | 9 | 5 | 2 | 2 | 15:10 | 5 | 17 |
| 3 |
|
FK Rabotnički | 9 | 4 | 1 | 4 | 12:11 | 1 | 13 |
| 4 |
|
FK Pelister | 9 | 3 | 3 | 3 | 13:9 | 4 | 12 |
| 5 |
|
FK Renova | 9 | 2 | 6 | 1 | 6:4 | 2 | 12 |
| 6 |
|
KF Shkupi | 9 | 3 | 3 | 3 | 7:7 | 0 | 12 |
| 7 |
|
Sileks Kratovo | 9 | 2 | 4 | 3 | 9:11 | -2 | 10 |
| 8 |
|
FK Pobeda Junior | 9 | 2 | 3 | 4 | 8:12 | -4 | 9 |
| 9 |
|
FK Bregalnica Štip | 9 | 1 | 4 | 4 | 6:15 | -9 | 7 |
| 10 |
|
Makedonija GP | 9 | 1 | 3 | 5 | 6:18 | -12 | 6 |
| Champions League Quali. | |
| Europa League Quali. | |
| Relegation | |
| Abstieg |
|
# FK Pelister qualifizierte sich als Pokalsieger für die Europa-League-Qualifikation. |
