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| 19.11.1999 | 1. SC Feucht | - | SpVgg Weiden | 1:0 | ||
| SC Weismain | - | 1. FC Passau | 3:0 | |||
| 20.11.1999 | FC Memmingen | - | SpVgg Landshut | 2:0 | ||
| SpVgg Jahn Forchheim | - | 1. FC Nürnberg II | 1:0 | |||
| SpVgg Stegaurach | - | FC Kempten | 3:1 | |||
| SSV Jahn Regensburg | - | FC Bayern Hof | 3:1 | |||
| TSV Schwaben Augsburg | - | Würzburger FV | 3:4 | |||
| 05.04.2000 | SpVgg Ansbach | - | SC 04 Schwabach | 2:1 | ||
| FC Starnberg | - | TSV Aindling | 0:0 |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SSV Jahn Regensburg | 20 | 15 | 1 | 4 | 46:18 | 28 | 46 |
| 2 |
|
FC Bayern Hof | 20 | 12 | 4 | 4 | 50:17 | 33 | 40 |
| 3 |
|
SpVgg Stegaurach | 20 | 12 | 4 | 4 | 47:25 | 22 | 40 |
| 4 |
|
1. SC Feucht | 20 | 10 | 4 | 6 | 30:20 | 10 | 34 |
| 5 |
|
SpVgg Weiden | 20 | 9 | 5 | 6 | 27:18 | 9 | 32 |
| 6 |
|
FC Starnberg | 20 | 9 | 4 | 7 | 32:27 | 5 | 31 |
| 7 |
|
SpVgg Ansbach | 20 | 8 | 6 | 6 | 37:30 | 7 | 30 |
| 8 |
|
1. FC Nürnberg II | 20 | 7 | 9 | 4 | 34:29 | 5 | 30 |
| 9 |
|
SC 04 Schwabach | 20 | 8 | 5 | 7 | 29:22 | 7 | 29 |
| 10 |
|
SpVgg Jahn Forchheim | 20 | 9 | 2 | 9 | 30:31 | -1 | 29 |
| 11 |
|
TSV Aindling | 20 | 7 | 7 | 6 | 27:24 | 3 | 28 |
| 12 |
|
SC Weismain | 20 | 7 | 5 | 8 | 30:31 | -1 | 26 |
| 13 |
|
FC Memmingen | 20 | 7 | 3 | 10 | 26:35 | -9 | 24 |
| 14 |
|
TSV Schwaben Augsburg | 20 | 7 | 2 | 11 | 30:48 | -18 | 23 |
| 15 |
|
Würzburger FV | 20 | 6 | 4 | 10 | 31:40 | -9 | 22 |
| 16 |
|
SpVgg Landshut | 20 | 5 | 3 | 12 | 27:38 | -11 | 18 |
| 17 |
|
FC Kempten | 20 | 3 | 3 | 14 | 15:54 | -39 | 12 |
| 18 |
|
1. FC Passau | 20 | 1 | 5 | 14 | 16:57 | -41 | 8 |
