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| 04.11.2006 | 14:00 | Rot-Weiß Erfurt | - | SV Wilhelmshaven | 1:0 (1:0) | |
| 14:00 | Dynamo Dresden | - | 1. FC Union Berlin | 2:0 (1:0) | ||
| 14:00 | Rot Weiss Ahlen | - | FC St. Pauli | 1:1 (0:1) | ||
| 14:00 | Wuppertaler SV | - | Werder Bremen II | 2:0 (2:0) | ||
| 14:00 | 1. FC Magdeburg | - | Hertha BSC II | 2:0 (1:0) | ||
| 14:00 | Bor. Mönchengladbach II | - | Hamburger SV II | 1:1 (0:0) | ||
| 14:00 | Fortuna Düsseldorf | - | Bayer Leverkusen II | 1:1 (1:0) | ||
| 14:00 | VfL Osnabrück | - | Kickers Emden | 2:2 (1:1) | ||
| 05.11.2006 | 14:00 | Borussia Dortmund II | - | VfB Lübeck | 1:1 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfB Lübeck | 14 | 7 | 3 | 4 | 20:13 | 7 | 24 |
| 2 |
|
VfL Osnabrück | 13 | 7 | 3 | 3 | 21:16 | 5 | 24 |
| 3 |
|
Fortuna Düsseldorf | 13 | 6 | 5 | 2 | 22:16 | 6 | 23 |
| 4 |
|
Rot-Weiß Erfurt | 13 | 7 | 2 | 4 | 17:13 | 4 | 23 |
| 5 |
|
Dynamo Dresden | 13 | 7 | 2 | 4 | 20:17 | 3 | 23 |
| 6 |
|
Wuppertaler SV | 13 | 6 | 4 | 3 | 21:15 | 6 | 22 |
| 7 |
|
Werder Bremen II | 14 | 6 | 4 | 4 | 26:21 | 5 | 22 |
| 8 |
|
Hamburger SV II | 13 | 6 | 4 | 3 | 16:13 | 3 | 22 |
| 9 |
|
1. FC Union Berlin | 13 | 6 | 3 | 4 | 19:12 | 7 | 21 |
| 10 |
|
1. FC Magdeburg | 13 | 6 | 2 | 5 | 17:17 | 0 | 20 |
| 11 |
|
FC St. Pauli | 13 | 5 | 5 | 3 | 15:15 | 0 | 20 |
| 12 |
|
Kickers Emden | 13 | 4 | 4 | 5 | 13:13 | 0 | 16 |
| 13 |
|
Rot Weiss Ahlen | 14 | 4 | 3 | 7 | 17:22 | -5 | 15 |
| 14 |
|
Holstein Kiel | 13 | 3 | 5 | 5 | 17:21 | -4 | 14 |
| 15 |
|
Hertha BSC II | 14 | 4 | 2 | 8 | 14:21 | -7 | 14 |
| 16 |
|
Bayer Leverkusen II | 13 | 3 | 4 | 6 | 14:16 | -2 | 13 |
| 17 |
|
SV Wilhelmshaven | 13 | 3 | 3 | 7 | 15:19 | -4 | 12 |
| 18 |
|
Borussia Dortmund II | 13 | 3 | 2 | 8 | 12:23 | -11 | 11 |
| 19 |
|
Bor. Mönchengladbach II | 14 | 1 | 4 | 9 | 10:23 | -13 | 7 |
