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| 13.04.2007 | 19:00 | Borussia Dortmund II | - | Wuppertaler SV | 1:0 (1:0) | |
| 19:30 | SV Wilhelmshaven | - | VfL Osnabrück | 1:0 (1:0) | ||
| 19:30 | VfB Lübeck | - | 1. FC Magdeburg | 0:1 (0:1) | ||
| 14.04.2007 | 14:00 | Kickers Emden | - | Bor. Mönchengladbach II | 1:1 (0:1) | |
| 14:00 | FC St. Pauli | - | Holstein Kiel | 2:0 (1:0) | ||
| 14:00 | 1. FC Union Berlin | - | Fortuna Düsseldorf | 1:0 (0:0) | ||
| 14:00 | Bayer Leverkusen II | - | Rot Weiss Ahlen | 0:1 (0:1) | ||
| 14:15 | Werder Bremen II | - | Dynamo Dresden | 1:1 (0:0) | ||
| 15.04.2007 | 14:00 | Hertha BSC II | - | Rot-Weiß Erfurt | 1:1 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 29 | 14 | 7 | 8 | 44:32 | 12 | 49 |
| 2 |
|
FC St. Pauli | 29 | 13 | 9 | 7 | 36:28 | 8 | 48 |
| 3 |
|
Kickers Emden | 29 | 13 | 8 | 8 | 38:31 | 7 | 47 |
| 4 |
|
Rot Weiss Ahlen | 30 | 13 | 8 | 9 | 44:39 | 5 | 47 |
| 5 |
|
Hamburger SV II | 29 | 12 | 10 | 7 | 43:35 | 8 | 46 |
| 6 |
|
1. FC Magdeburg | 29 | 12 | 10 | 7 | 39:34 | 5 | 46 |
| 7 |
|
Dynamo Dresden | 29 | 13 | 6 | 10 | 39:33 | 6 | 45 |
| 8 |
|
Wuppertaler SV | 29 | 12 | 8 | 9 | 42:38 | 4 | 44 |
| 9 |
|
1. FC Union Berlin | 29 | 12 | 7 | 10 | 38:26 | 12 | 43 |
| 10 |
|
Werder Bremen II | 30 | 12 | 7 | 11 | 46:40 | 6 | 43 |
| 11 |
|
VfB Lübeck | 30 | 13 | 4 | 13 | 40:36 | 4 | 43 |
| 12 |
|
Fortuna Düsseldorf | 29 | 10 | 10 | 9 | 38:37 | 1 | 40 |
| 13 |
|
Rot-Weiß Erfurt | 29 | 10 | 10 | 9 | 32:34 | -2 | 40 |
| 14 |
|
Holstein Kiel | 30 | 9 | 9 | 12 | 33:42 | -9 | 36 |
| 15 |
|
Borussia Dortmund II | 30 | 9 | 5 | 16 | 30:45 | -15 | 32 |
| 16 |
|
Bayer Leverkusen II | 29 | 7 | 8 | 14 | 30:41 | -11 | 29 |
| 17 |
|
SV Wilhelmshaven | 29 | 7 | 8 | 14 | 33:45 | -12 | 29 |
| 18 |
|
Hertha BSC II | 30 | 7 | 8 | 15 | 28:42 | -14 | 29 |
| 19 |
|
Bor. Mönchengladbach II | 30 | 6 | 8 | 16 | 32:47 | -15 | 26 |
