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| 17.05.2013 | 17:00 | Bohemians Praha | - | FC Fastav Zlín | 2:1 (2:0) | |
| 20.05.2013 | 19:15 | Viktoria Žižkov | - | Bohemians 1905 | 2:0 (2:0) | |
| 21.05.2013 | 17:00 | 1. HFK Olomouc | - | FK Pardubice | 2:1 (2:0) | |
| 22.05.2013 | 15:30 | FK Baník Most | - | MFK Karviná | 2:0 (1:0) | |
| 17:00 | FK Čáslav | - | 1. SC Znojmo | 0:1 (0:1) | ||
| 17:00 | FK MAS Táborsko | - | FK Varnsdorf | 1:3 (1:1) | ||
| 17:00 | FK Ústí nad Labem | - | FC Graffin Vlašim | 0:1 (0:0) | ||
| 17:00 | FK Baník Sokolov | - | SFC Opava | 1:0 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. SC Znojmo | 28 | 16 | 7 | 5 | 42:22 | 20 | 55 |
| 2 |
|
Bohemians 1905 | 28 | 15 | 8 | 5 | 43:21 | 22 | 53 |
| 3 |
|
FK Baník Sokolov | 28 | 13 | 8 | 7 | 34:24 | 10 | 47 |
| 4 |
|
1. HFK Olomouc | 28 | 14 | 5 | 9 | 38:39 | -1 | 47 |
| 5 |
|
FK Pardubice | 28 | 14 | 3 | 11 | 45:28 | 17 | 45 |
| 6 |
|
FC Fastav Zlín | 28 | 13 | 6 | 9 | 46:34 | 12 | 45 |
| 7 |
|
FK Varnsdorf | 28 | 13 | 4 | 11 | 44:35 | 9 | 43 |
| 8 |
|
Viktoria Žižkov | 28 | 11 | 9 | 8 | 34:26 | 8 | 42 |
| 9 |
|
MFK Karviná | 28 | 10 | 8 | 10 | 41:42 | -1 | 38 |
| 10 |
|
FK Ústí nad Labem | 28 | 10 | 6 | 12 | 29:39 | -10 | 36 |
| 11 |
|
Bohemians Praha | 28 | 5 | 16 | 7 | 25:29 | -4 | 31 |
| 12 |
|
FK MAS Táborsko | 28 | 7 | 10 | 11 | 31:39 | -8 | 31 |
| 13 |
|
FC Graffin Vlašim | 28 | 8 | 6 | 14 | 34:53 | -19 | 30 |
| 14 |
|
FK Baník Most | 28 | 7 | 7 | 14 | 28:44 | -16 | 28 |
| 15 |
|
FK Čáslav | 28 | 5 | 7 | 16 | 21:39 | -18 | 22 |
| 16 |
|
SFC Opava | 28 | 5 | 6 | 17 | 32:53 | -21 | 21 |
| Aufstieg | |
| Abstieg |
