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| 06.04.2013 | 16:30 | Olimpic Sarajevo | - | Velež Mostar | 1:1 (1:1) | |
| 16:30 | Gradina Srebrenik | - | Leotar Trebinje | 0:1 (0:1) | ||
| 16:30 | Radnik Bijeljina | - | Borac Banja Luka | 0:0 (0:0) | ||
| 16:30 | FK Rudar | - | Široki Brijeg | 2:1 (1:0) | ||
| 19:00 | Čelik Zenica | - | NK Travnik | 2:1 (1:0) | ||
| 07.04.2013 | 16:00 | Slavija Sarajevo | - | Željezničar Sarajevo | 1:2 (1:0) | |
| 16:30 | Zrinjski Mostar | - | Zvijezda Gradačac | 1:2 (0:0) | ||
| 16:30 | NK GOŠK Gabela | - | FK Sarajevo | 0:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Željezničar Sarajevo | 20 | 15 | 2 | 3 | 30:13 | 17 | 47 |
| 2 |
|
FK Sarajevo | 20 | 13 | 4 | 3 | 37:13 | 24 | 43 |
| 3 |
|
Borac Banja Luka | 20 | 10 | 5 | 5 | 28:15 | 13 | 35 |
| 4 |
|
Olimpic Sarajevo | 20 | 9 | 7 | 4 | 24:17 | 7 | 34 |
| 5 |
|
Široki Brijeg | 20 | 9 | 4 | 7 | 30:19 | 11 | 31 |
| 6 |
|
Čelik Zenica | 20 | 8 | 6 | 6 | 24:20 | 4 | 30 |
| 7 |
|
Slavija Sarajevo | 20 | 8 | 6 | 6 | 18:16 | 2 | 30 |
| 8 |
|
Leotar Trebinje | 20 | 8 | 5 | 7 | 21:22 | -1 | 29 |
| 9 |
|
Zrinjski Mostar | 20 | 9 | 2 | 9 | 18:26 | -8 | 29 |
| 10 |
|
Radnik Bijeljina | 20 | 6 | 7 | 7 | 20:21 | -1 | 25 |
| 11 |
|
FK Rudar | 20 | 7 | 3 | 10 | 24:27 | -3 | 24 |
| 12 |
|
Velež Mostar | 20 | 6 | 4 | 10 | 28:30 | -2 | 22 |
| 13 |
|
Zvijezda Gradačac | 20 | 6 | 4 | 10 | 23:27 | -4 | 22 |
| 14 |
|
NK Travnik | 20 | 5 | 5 | 10 | 16:32 | -16 | 20 |
| 15 |
|
NK GOŠK Gabela | 20 | 3 | 7 | 10 | 13:29 | -16 | 16 |
| 16 |
|
Gradina Srebrenik | 20 | 0 | 5 | 15 | 13:40 | -27 | 5 |
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| Europa League Quali. | |
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