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| 03.12.1999 | SC Weismain | - | 1. FC Nürnberg II | 0:2 | ||
| 1. SC Feucht | - | FC Bayern Hof | 2:1 | |||
| 04.12.1999 | FC Starnberg | - | SC 04 Schwabach | 1:0 | ||
| SpVgg Stegaurach | - | TSV Aindling | 7:2 | |||
| TSV Schwaben Augsburg | - | 1. FC Passau | 1:0 | |||
| FC Memmingen | - | SSV Jahn Regensburg | 1:2 | |||
| 26.02.2000 | FC Kempten | - | Würzburger FV | 2:2 | ||
| 29.03.2000 | SpVgg Ansbach | - | SpVgg Landshut | 3:2 | ||
| SpVgg Jahn Forchheim | - | SpVgg Weiden | 0:1 |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SSV Jahn Regensburg | 22 | 16 | 2 | 4 | 51:22 | 29 | 50 |
| 2 |
|
SpVgg Stegaurach | 22 | 14 | 4 | 4 | 59:27 | 32 | 46 |
| 3 |
|
FC Bayern Hof | 22 | 12 | 5 | 5 | 52:20 | 32 | 41 |
| 4 |
|
SpVgg Weiden | 22 | 11 | 5 | 6 | 32:21 | 11 | 38 |
| 5 |
|
1. SC Feucht | 22 | 11 | 4 | 7 | 32:24 | 8 | 37 |
| 6 |
|
FC Starnberg | 22 | 10 | 5 | 7 | 34:28 | 6 | 35 |
| 7 |
|
1. FC Nürnberg II | 22 | 8 | 10 | 4 | 37:30 | 7 | 34 |
| 8 |
|
SpVgg Ansbach | 22 | 9 | 6 | 7 | 43:36 | 7 | 33 |
| 9 |
|
SC 04 Schwabach | 22 | 8 | 6 | 8 | 31:25 | 6 | 30 |
| 10 |
|
SpVgg Jahn Forchheim | 22 | 9 | 3 | 10 | 32:34 | -2 | 30 |
| 11 |
|
TSV Aindling | 22 | 7 | 8 | 7 | 30:32 | -2 | 29 |
| 12 |
|
TSV Schwaben Augsburg | 22 | 9 | 2 | 11 | 34:49 | -15 | 29 |
| 13 |
|
SC Weismain | 22 | 7 | 6 | 9 | 31:34 | -3 | 27 |
| 14 |
|
FC Memmingen | 22 | 7 | 4 | 11 | 28:38 | -10 | 25 |
| 15 |
|
Würzburger FV | 22 | 6 | 6 | 10 | 36:45 | -9 | 24 |
| 16 |
|
SpVgg Landshut | 22 | 6 | 3 | 13 | 32:41 | -9 | 21 |
| 17 |
|
FC Kempten | 22 | 3 | 4 | 15 | 18:59 | -41 | 13 |
| 18 |
|
1. FC Passau | 22 | 1 | 5 | 16 | 16:63 | -47 | 8 |
