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| H | FK Pobeda | - | FC Superfund | 1:1 (1:0) | ||
| R | FC Superfund | - | FK Pobeda | 2:1 (0:0) | ||
| H: 05.07.2003 17:00 | R: 12.07.2003 19:30 | Sieger: FC Superfund | ||||
| H | Örgryte IS | - | OGC Nice | 3:2 (1:1) | ||
| R | OGC Nice | - | Örgryte IS | 2:1 (2:1) | ||
| H: 05.07.2003 17:00 | R: 12.07.2003 20:00 | Sieger: OGC Nice | ||||
| H | Shakhter Soligorsk | - | HNK Cibalia | 1:1 (1:0) | ||
| R | HNK Cibalia | - | Shakhter Soligorsk | 4:2 (1:2) | ||
| H: 05.07.2003 17:00 | R: 12.07.2003 18:00 | Sieger: HNK Cibalia | ||||
| H | Marek Dupnitza | - | VfL Wolfsburg | 1:1 (0:1) | ||
| R | VfL Wolfsburg | - | Marek Dupnitza | 2:0 (1:0) | ||
| H: 05.07.2003 17:15 | R: 12.07.2003 20:00 | Sieger: VfL Wolfsburg | ||||
| H | Dacia Chişinău | - | FK Partizani | 2:0 (0:0) | ||
| R | FK Partizani | - | Dacia Chişinău | 0:3 (0:2) | ||
| H: 05.07.2003 18:00 | R: 12.07.2003 18:00 | Sieger: Dacia Chişinău | ||||
| H | FC Anet Koper | - | ZTS Dubnica | 1:0 (0:0) | ||
| R | ZTS Dubnica | - | FC Anet Koper | 3:2 (1:2) | ||
| H: 05.07.2003 18:00 | R: 12.07.2003 18:00 | Sieger: FC Anet Koper | ||||
| H | FC Thun | - | 1. FC Brno | 2:3 (1:1) | ||
| R | 1. FC Brno | - | FC Thun | 1:1 (1:0) | ||
| H: 05.07.2003 19:00 | R: 12.07.2003 18:00 | Sieger: 1. FC Brno | ||||
| H | Sloboda Tuzla | - | Lierse SK (old) | 1:0 (0:0) | ||
| R | Lierse SK (old) | - | Sloboda Tuzla | 5:1 (0:1) | ||
| H: 05.07.2003 19:30 | R: 12.07.2003 19:00 | Sieger: Lierse SK (old) | ||||
| H | Willem II | - | FC Wil 1900 | 2:1 (1:1) | ||
| R | FC Wil 1900 | - | Willem II | 3:1 (1:0) | ||
| H: 05.07.2003 19:30 | R: 12.07.2003 19:00 | Sieger: FC Wil 1900 | ||||
| H | Brescia Calcio | - | Gloria Bistrița (old) | 2:1 (1:1) | ||
| R | Gloria Bistrița (old) | - | Brescia Calcio | 1:1 (0:0) | ||
| H: 05.07.2003 20:30 | R: 12.07.2003 16:00 | Sieger: Brescia Calcio | ||||
| H | Sint-Truidense VV | - | Tobyl Kostanay | 0:2 (0:1) | ||
| R | Tobyl Kostanay | - | Sint-Truidense VV | 1:0 (0:0) | ||
| H: 06.07.2003 17:00 | R: 12.07.2003 12:00 | Sieger: Tobyl Kostanay | ||||
| H | 1. FC Synot Stare Mesto | - | OFK Beograd | 1:0 (0:0) | ||
| R | OFK Beograd | - | 1. FC Synot Stare Mesto | 3:3 (1:1) | ||
| H: 06.07.2003 17:00 | R: 12.07.2003 17:30 | Sieger: 1. FC Synot Stare Mesto | ||||
| H | Slovan Liberec | - | Shamrock Rovers | 2:0 (2:0) | ||
| R | Shamrock Rovers | - | Slovan Liberec | 0:2 (0:0) | ||
| H: 06.07.2003 17:30 | R: 13.07.2003 16:15 | Sieger: Slovan Liberec | ||||
| H | Akratitos Liosion | - | AC Allianssi | 0:1 (0:0) | ||
| R | AC Allianssi | - | Akratitos Liosion | 0:0 (0:0) | ||
| H: 06.07.2003 18:00 | R: 13.07.2003 17:30 | Sieger: AC Allianssi | ||||
| H | Tampere United | - | FK Sutjeska | 0:0 (0:0) | ||
| R | FK Sutjeska | - | Tampere United | 0:1 (0:0) | ||
| H: 06.07.2003 18:00 | R: 13.07.2003 17:00 | Sieger: Tampere United | ||||
| H | Racing Santander | - | Győri ETO FC | 1:0 (1:0) | ||
| R | Győri ETO FC | - | Racing Santander | 2:1 (1:0) | ||
| H: 06.07.2003 18:00 | R: 12.07.2003 19:00 | Sieger: Racing Santander | ||||
