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| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC Ingolstadt 04 II | 28 | 13 | 11 | 4 | 26:13 | 13 | 50 |
| 2 |
|
Wacker Burghausen | 28 | 11 | 16 | 1 | 17:7 | 10 | 49 |
| 3 |
|
FV Illertissen | 28 | 11 | 11 | 6 | 23:14 | 9 | 44 |
| 4 |
|
Jahn Regensburg | 28 | 10 | 13 | 5 | 24:16 | 8 | 43 |
| 5 |
|
SpVgg Unterhaching | 28 | 11 | 9 | 8 | 25:15 | 10 | 42 |
| 6 |
|
SpVgg Bayreuth | 28 | 10 | 12 | 6 | 23:17 | 6 | 42 |
| 7 |
|
Bayern München II | 28 | 9 | 12 | 7 | 22:13 | 9 | 39 |
| 8 |
|
1. FC Nürnberg II | 28 | 10 | 9 | 9 | 20:21 | -1 | 39 |
| 9 |
|
TSV 1860 München II | 28 | 8 | 11 | 9 | 15:11 | 4 | 35 |
| 10 |
|
FC Amberg | 28 | 7 | 13 | 8 | 15:15 | 0 | 34 |
| 11 |
|
SpVgg Greuther Fürth II | 28 | 8 | 10 | 10 | 20:23 | -3 | 34 |
| 12 |
|
TSV 1896 Rain | 28 | 8 | 9 | 11 | 17:22 | -5 | 33 |
| 13 |
|
Viktoria Aschaffenburg | 28 | 7 | 11 | 10 | 15:24 | -9 | 32 |
| 14 |
|
FC Augsburg II | 28 | 6 | 13 | 9 | 17:28 | -11 | 31 |
| 15 |
|
1. FC Schweinfurt 05 | 28 | 4 | 16 | 8 | 12:18 | -6 | 28 |
| 16 |
|
SV Schalding-Heining | 28 | 4 | 15 | 9 | 10:19 | -9 | 27 |
| 17 |
|
FC Memmingen | 28 | 6 | 8 | 14 | 13:23 | -10 | 26 |
| 18 |
|
TSV Buchbach | 28 | 2 | 15 | 11 | 10:25 | -15 | 21 |
| Playoffs | |
| Relegation | |
| Abstieg |
