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| 30.03.2007 | 18:00 | Borussia Dortmund II | - | Dynamo Dresden | 2:3 (1:1) | |
| 31.03.2007 | 14:00 | Kickers Emden | - | Hamburger SV II | 2:0 (2:0) | |
| 14:00 | SV Wilhelmshaven | - | Bor. Mönchengladbach II | 1:2 (0:2) | ||
| 14:00 | Werder Bremen II | - | Fortuna Düsseldorf | 2:0 (0:0) | ||
| 14:00 | Wuppertaler SV | - | 1. FC Magdeburg | 1:3 (1:1) | ||
| 14:00 | 1. FC Union Berlin | - | Rot Weiss Ahlen | 1:1 (0:0) | ||
| 14:00 | Bayer Leverkusen II | - | Holstein Kiel | 4:0 (1:0) | ||
| 14:00 | Hertha BSC II | - | VfL Osnabrück | 1:3 (1:1) | ||
| 01.04.2007 | 14:00 | VfB Lübeck | - | Rot-Weiß Erfurt | 0:2 (0:2) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 27 | 13 | 7 | 7 | 43:31 | 12 | 46 |
| 2 |
|
Hamburger SV II | 28 | 12 | 9 | 7 | 43:35 | 8 | 45 |
| 3 |
|
Kickers Emden | 27 | 13 | 6 | 8 | 37:30 | 7 | 45 |
| 4 |
|
FC St. Pauli | 27 | 12 | 8 | 7 | 34:28 | 6 | 44 |
| 5 |
|
Wuppertaler SV | 28 | 12 | 8 | 8 | 42:37 | 5 | 44 |
| 6 |
|
VfB Lübeck | 28 | 13 | 4 | 11 | 40:33 | 7 | 43 |
| 7 |
|
1. FC Magdeburg | 27 | 11 | 9 | 7 | 36:32 | 4 | 42 |
| 8 |
|
Werder Bremen II | 28 | 12 | 5 | 11 | 44:38 | 6 | 41 |
| 9 |
|
Dynamo Dresden | 27 | 12 | 5 | 10 | 36:32 | 4 | 41 |
| 10 |
|
Rot Weiss Ahlen | 28 | 11 | 8 | 9 | 42:39 | 3 | 41 |
| 11 |
|
1. FC Union Berlin | 27 | 11 | 7 | 9 | 37:25 | 12 | 40 |
| 12 |
|
Fortuna Düsseldorf | 27 | 10 | 10 | 7 | 38:34 | 4 | 40 |
| 13 |
|
Rot-Weiß Erfurt | 27 | 10 | 8 | 9 | 30:32 | -2 | 38 |
| 14 |
|
Holstein Kiel | 28 | 9 | 8 | 11 | 33:40 | -7 | 35 |
| 15 |
|
Bayer Leverkusen II | 27 | 7 | 7 | 13 | 29:39 | -10 | 28 |
| 16 |
|
Borussia Dortmund II | 28 | 8 | 4 | 16 | 27:43 | -16 | 28 |
| 17 |
|
SV Wilhelmshaven | 27 | 6 | 8 | 13 | 32:44 | -12 | 26 |
| 18 |
|
Hertha BSC II | 28 | 6 | 7 | 15 | 25:41 | -16 | 25 |
| 19 |
|
Bor. Mönchengladbach II | 28 | 6 | 6 | 16 | 30:45 | -15 | 24 |
