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| 04.04.2007 | 19:30 | Hamburger SV II | - | FC St. Pauli | 0:0 (0:0) | |
| 07.04.2007 | 14:00 | Holstein Kiel | - | Kickers Emden | 0:0 (0:0) | |
| 14:00 | Rot-Weiß Erfurt | - | Werder Bremen II | 1:1 (0:0) | ||
| 14:00 | Rot Weiss Ahlen | - | SV Wilhelmshaven | 1:0 (0:0) | ||
| 14:00 | Dynamo Dresden | - | VfB Lübeck | 2:0 (0:0) | ||
| 14:00 | 1. FC Magdeburg | - | Borussia Dortmund II | 2:2 (0:0) | ||
| 14:00 | Bor. Mönchengladbach II | - | Bayer Leverkusen II | 1:1 (0:0) | ||
| 14:00 | Fortuna Düsseldorf | - | Hertha BSC II | 0:2 (0:1) | ||
| 14:00 | VfL Osnabrück | - | 1. FC Union Berlin | 1:0 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 28 | 14 | 7 | 7 | 44:31 | 13 | 49 |
| 2 |
|
Hamburger SV II | 29 | 12 | 10 | 7 | 43:35 | 8 | 46 |
| 3 |
|
Kickers Emden | 28 | 13 | 7 | 8 | 37:30 | 7 | 46 |
| 4 |
|
FC St. Pauli | 28 | 12 | 9 | 7 | 34:28 | 6 | 45 |
| 5 |
|
Dynamo Dresden | 28 | 13 | 5 | 10 | 38:32 | 6 | 44 |
| 6 |
|
Wuppertaler SV | 28 | 12 | 8 | 8 | 42:37 | 5 | 44 |
| 7 |
|
Rot Weiss Ahlen | 29 | 12 | 8 | 9 | 43:39 | 4 | 44 |
| 8 |
|
VfB Lübeck | 29 | 13 | 4 | 12 | 40:35 | 5 | 43 |
| 9 |
|
1. FC Magdeburg | 28 | 11 | 10 | 7 | 38:34 | 4 | 43 |
| 10 |
|
Werder Bremen II | 29 | 12 | 6 | 11 | 45:39 | 6 | 42 |
| 11 |
|
1. FC Union Berlin | 28 | 11 | 7 | 10 | 37:26 | 11 | 40 |
| 12 |
|
Fortuna Düsseldorf | 28 | 10 | 10 | 8 | 38:36 | 2 | 40 |
| 13 |
|
Rot-Weiß Erfurt | 28 | 10 | 9 | 9 | 31:33 | -2 | 39 |
| 14 |
|
Holstein Kiel | 29 | 9 | 9 | 11 | 33:40 | -7 | 36 |
| 15 |
|
Bayer Leverkusen II | 28 | 7 | 8 | 13 | 30:40 | -10 | 29 |
| 16 |
|
Borussia Dortmund II | 29 | 8 | 5 | 16 | 29:45 | -16 | 29 |
| 17 |
|
Hertha BSC II | 29 | 7 | 7 | 15 | 27:41 | -14 | 28 |
| 18 |
|
SV Wilhelmshaven | 28 | 6 | 8 | 14 | 32:45 | -13 | 26 |
| 19 |
|
Bor. Mönchengladbach II | 29 | 6 | 7 | 16 | 31:46 | -15 | 25 |
