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| 03.04.2010 | 14:00 | SpVgg Unterhaching | - | Jahn Regensburg | 2:0 (1:0) | |
| 14:00 | FC Ingolstadt 04 | - | FC Carl Zeiss Jena | 2:2 (1:0) | ||
| 14:00 | Rot-Weiß Erfurt | - | Erzgebirge Aue | 0:0 (0:0) | ||
| 14:00 | VfL Osnabrück | - | Bayern München II | 4:1 (3:1) | ||
| 14:00 | Holstein Kiel | - | SV Wehen Wiesbaden | 1:1 (0:0) | ||
| 14:00 | Wacker Burghausen | - | VfB Stuttgart II | 3:0 (1:0) | ||
| 14:00 | Eintracht Braunschweig | - | Wuppertaler SV | 3:0 (0:0) | ||
| 14:00 | Werder Bremen II | - | 1. FC Heidenheim 1846 | 1:1 (1:0) | ||
| 04.04.2010 | 14:00 | Kickers Offenbach | - | Dynamo Dresden | 1:0 (0:0) | |
| 14:00 | Borussia Dortmund II | - | SV Sandhausen | 2:1 (2:0) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 32 | 16 | 8 | 8 | 44:29 | 15 | 56 |
| 2 |
|
FC Ingolstadt 04 | 32 | 15 | 8 | 9 | 59:38 | 21 | 53 |
| 3 |
|
Erzgebirge Aue | 32 | 15 | 8 | 9 | 43:36 | 7 | 53 |
| 4 |
|
1. FC Heidenheim 1846 | 32 | 15 | 7 | 10 | 54:43 | 11 | 52 |
| 5 |
|
FC Carl Zeiss Jena | 32 | 14 | 10 | 8 | 44:37 | 7 | 52 |
| 6 |
|
Eintracht Braunschweig | 32 | 14 | 9 | 9 | 44:30 | 14 | 51 |
| 7 |
|
Kickers Offenbach | 32 | 12 | 11 | 9 | 45:30 | 15 | 47 |
| 8 |
|
Bayern München II | 32 | 12 | 8 | 12 | 44:55 | -11 | 44 |
| 9 |
|
Dynamo Dresden | 32 | 12 | 7 | 13 | 34:36 | -2 | 43 |
| 10 |
|
SV Sandhausen | 32 | 11 | 10 | 11 | 48:51 | -3 | 43 |
| 11 |
|
Rot-Weiß Erfurt | 32 | 11 | 9 | 12 | 33:35 | -2 | 42 |
| 12 |
|
Wacker Burghausen | 32 | 12 | 6 | 14 | 38:53 | -15 | 42 |
| 13 |
|
Jahn Regensburg | 32 | 10 | 11 | 11 | 36:37 | -1 | 41 |
| 14 |
|
SV Wehen Wiesbaden | 32 | 11 | 8 | 13 | 42:48 | -6 | 41 |
| 15 |
|
Werder Bremen II | 32 | 11 | 7 | 14 | 42:45 | -3 | 40 |
| 16 |
|
SpVgg Unterhaching | 32 | 10 | 9 | 13 | 41:43 | -2 | 39 |
| 17 |
|
VfB Stuttgart II | 32 | 12 | 3 | 17 | 41:45 | -4 | 39 |
| 18 |
|
Borussia Dortmund II | 32 | 10 | 6 | 16 | 36:45 | -9 | 36 |
| 19 |
|
Holstein Kiel | 32 | 8 | 9 | 15 | 33:47 | -14 | 33 |
| 20 |
|
Wuppertaler SV | 32 | 9 | 6 | 17 | 35:53 | -18 | 33 |
| Aufstieg | |
| Relegation | |
| Abstieg |
