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| 26.09.2009 | 14:00 | Jahn Regensburg | - | FC Ingolstadt 04 | 0:2 (0:1) | |
| 14:00 | Dynamo Dresden | - | Eintracht Braunschweig | 1:1 (0:1) | ||
| 14:00 | FC Carl Zeiss Jena | - | Werder Bremen II | 2:2 (0:1) | ||
| 14:00 | SpVgg Unterhaching | - | Kickers Offenbach | 1:2 (1:0) | ||
| 14:00 | SV Sandhausen | - | Rot-Weiß Erfurt | 1:2 (0:1) | ||
| 14:00 | SV Wehen Wiesbaden | - | VfL Osnabrück | 4:0 (2:0) | ||
| 14:00 | VfB Stuttgart II | - | Borussia Dortmund II | 2:1 (0:1) | ||
| 14:00 | 1. FC Heidenheim 1846 | - | Wacker Burghausen | 6:1 (2:1) | ||
| 27.09.2009 | 14:00 | Bayern München II | - | Erzgebirge Aue | 2:3 (1:2) | |
| 14:00 | Wuppertaler SV | - | Holstein Kiel | 5:3 (1:0) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Jahn Regensburg | 11 | 6 | 3 | 2 | 18:9 | 9 | 21 |
| 2 |
|
SV Sandhausen | 11 | 6 | 2 | 3 | 24:16 | 8 | 20 |
| 3 |
|
Wacker Burghausen | 11 | 6 | 2 | 3 | 16:20 | -4 | 20 |
| 4 |
|
FC Ingolstadt 04 | 11 | 6 | 1 | 4 | 25:12 | 13 | 19 |
| 5 |
|
VfB Stuttgart II | 11 | 6 | 1 | 4 | 19:13 | 6 | 19 |
| 6 |
|
Kickers Offenbach | 11 | 5 | 3 | 3 | 13:7 | 6 | 18 |
| 7 |
|
Erzgebirge Aue | 11 | 5 | 3 | 3 | 12:11 | 1 | 18 |
| 8 |
|
Eintracht Braunschweig | 11 | 5 | 2 | 4 | 11:12 | -1 | 17 |
| 9 |
|
FC Carl Zeiss Jena | 11 | 4 | 4 | 3 | 16:13 | 3 | 16 |
| 10 |
|
SV Wehen Wiesbaden | 11 | 5 | 1 | 5 | 15:13 | 2 | 16 |
|
VfL Osnabrück | 11 | 5 | 1 | 5 | 15:13 | 2 | 16 | |
| 12 |
|
SpVgg Unterhaching | 11 | 4 | 4 | 3 | 17:17 | 0 | 16 |
| 13 |
|
1. FC Heidenheim 1846 | 11 | 4 | 3 | 4 | 20:18 | 2 | 15 |
| 14 |
|
Rot-Weiß Erfurt | 11 | 4 | 3 | 4 | 15:17 | -2 | 15 |
| 15 |
|
Dynamo Dresden | 11 | 3 | 3 | 5 | 9:12 | -3 | 12 |
| 16 |
|
Borussia Dortmund II | 11 | 3 | 2 | 6 | 11:13 | -2 | 11 |
| 17 |
|
Werder Bremen II | 11 | 3 | 2 | 6 | 12:19 | -7 | 11 |
| 18 |
|
Holstein Kiel | 11 | 3 | 1 | 7 | 15:21 | -6 | 10 |
| 19 |
|
Bayern München II | 11 | 2 | 3 | 6 | 14:28 | -14 | 9 |
| 20 |
|
Wuppertaler SV | 11 | 2 | 2 | 7 | 13:26 | -13 | 8 |
| Aufstieg | |
| Relegation | |
| Abstieg |
