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| 06.03.2010 | 14:00 | 1. FC Heidenheim 1846 | - | VfL Osnabrück | 1:0 (0:0) | |
| 14:00 | SV Wehen Wiesbaden | - | Bayern München II | 1:2 (1:1) | ||
| 14:00 | Jahn Regensburg | - | SV Sandhausen | 1:1 (0:0) | ||
| 14:00 | Kickers Offenbach | - | Werder Bremen II | 4:0 (2:0) | ||
| 14:00 | FC Ingolstadt 04 | - | Eintracht Braunschweig | 3:3 (3:0) | ||
| 10.03.2010 | 19:00 | FC Carl Zeiss Jena | - | Holstein Kiel | 3:0 (2:0) | |
| 07.04.2010 | 18:30 | VfB Stuttgart II | - | Erzgebirge Aue | 1:2 (0:1) | |
| 18:30 | SpVgg Unterhaching | - | Wacker Burghausen | 1:1 (0:1) | ||
| 19:15 | Dynamo Dresden | - | Borussia Dortmund II | 3:2 (2:0) | ||
| 27.04.2010 | 18:30 | Wuppertaler SV | - | Rot-Weiß Erfurt | 0:3 (0:1) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 27 | 14 | 6 | 7 | 36:24 | 12 | 48 |
| 2 |
|
Erzgebirge Aue | 27 | 14 | 5 | 8 | 38:32 | 6 | 47 |
| 3 |
|
FC Ingolstadt 04 | 27 | 13 | 5 | 9 | 52:33 | 19 | 44 |
| 4 |
|
1. FC Heidenheim 1846 | 27 | 13 | 5 | 9 | 46:39 | 7 | 44 |
| 5 |
|
Kickers Offenbach | 27 | 11 | 9 | 7 | 43:26 | 17 | 42 |
| 6 |
|
Eintracht Braunschweig | 27 | 11 | 9 | 7 | 38:27 | 11 | 42 |
| 7 |
|
FC Carl Zeiss Jena | 27 | 11 | 8 | 8 | 35:31 | 4 | 41 |
| 8 |
|
Bayern München II | 27 | 11 | 6 | 10 | 39:46 | -7 | 39 |
| 9 |
|
Rot-Weiß Erfurt | 27 | 10 | 8 | 9 | 32:31 | 1 | 38 |
| 10 |
|
SV Sandhausen | 27 | 10 | 8 | 9 | 42:44 | -2 | 38 |
| 11 |
|
Wacker Burghausen | 27 | 10 | 6 | 11 | 30:45 | -15 | 36 |
| 12 |
|
Jahn Regensburg | 27 | 9 | 8 | 10 | 31:31 | 0 | 35 |
| 13 |
|
Werder Bremen II | 27 | 10 | 5 | 12 | 39:41 | -2 | 35 |
| 14 |
|
Dynamo Dresden | 27 | 9 | 7 | 11 | 31:34 | -3 | 34 |
| 15 |
|
SpVgg Unterhaching | 27 | 8 | 9 | 10 | 35:38 | -3 | 33 |
| 16 |
|
SV Wehen Wiesbaden | 27 | 9 | 5 | 13 | 35:45 | -10 | 32 |
| 17 |
|
Wuppertaler SV | 27 | 9 | 4 | 14 | 32:44 | -12 | 31 |
| 18 |
|
VfB Stuttgart II | 27 | 9 | 3 | 15 | 37:40 | -3 | 30 |
| 19 |
|
Borussia Dortmund II | 27 | 8 | 5 | 14 | 30:39 | -9 | 29 |
| 20 |
|
Holstein Kiel | 27 | 7 | 7 | 13 | 30:41 | -11 | 28 |
| Aufstieg | |
| Relegation | |
| Abstieg |
